Nathan Patrick Palmer, Ph.D.

Nathan Palmer, PhD

Senior Research Scientist in Biomedical Informatics
Director of Data and Analytics Platforms, Center for Computational Biomedicine

Nathan Palmer received a PhD in computer science from the Massachusetts Institute of Technology, studying machine learning, protein folding, and functional genomics. He then held a postdoctoral research position in the lab of Isaac Kohane at Harvard Medical School, during which his research interests expanded to include large-scale genomics, epidemiology, and medical informatics. He then went on to direct the Healthcare Data Science Program in the Department of Biomedical Informatics at Harvard Medical School.

In his current role as Director of Data and Analytics Platforms for the Center for Computational Biomedicine (CCB), Dr. Palmer is part of a team of leading-edge technologists who evaluate and deploy modern data analytic processing and storage platforms to meet the needs of emergent research programs supported by CCB, with the goal of improving research reproducibility, scale, and efficiency. This team provides access to data resources comprising tens of billions of medical facts from tens of millions of patients to the research community at HMS, and develops both the technical and methodological solutions to perform novel analytics at scale.

Dr. Palmer continues to work in the area of functional genomics and epidemiology through collaborations with the various Harvard teaching hospitals.

Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data.
Authors: Beam AL, Kompa B, Schmaltz A, Fried I, Weber G, Palmer N, Shi X, Cai T, Kohane IS.
Pac Symp Biocomput
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International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.
Authors: Brat GA, Weber GM, Gehlenborg N, Avillach P, Palmer NP, Chiovato L, Cimino J, Waitman LR, Omenn GS, Malovini A, Moore JH, Beaulieu-Jones BK, Tibollo V, Murphy SN, Yi SL, Keller MS, Bellazzi R, Hanauer DA, Serret-Larmande A, Gutierrez-Sacristan A, Holmes JJ, Bell DS, Mandl KD, Follett RW, Klann JG, Murad DA, Scudeller L, Bucalo M, Kirchoff K, Craig J, Obeid J, Jouhet V, Griffier R, Cossin S, Moal B, Patel LP, Bellasi A, Prokosch HU, Kraska D, Sliz P, Tan ALM, Ngiam KY, Zambelli A, Mowery DL, Schiver E, Devkota B, Bradford RL, Daniar M, Daniel C, Benoit V, Bey R, Paris N, Serre P, Orlova N, Dubiel J, Hilka M, Jannot AS, Breant S, Leblanc J, Griffon N, Burgun A, Bernaux M, Sandrin A, Salamanca E, Cormont S, Ganslandt T, Gradinger T, Champ J, Boeker M, Martel P, Esteve L, Gramfort A, Grisel O, Leprovost D, Moreau T, Varoquaux G, Vie JJ, Wassermann D, Mensch A, Caucheteux C, Haverkamp C, Lemaitre G, Bosari S, Krantz ID, South A, Cai T, Kohane IS.
NPJ Digit Med
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A fast divide-and-conquer sparse Cox regression.
Authors: Wang Y, Hong C, Palmer N, Di Q, Schwartz J, Kohane I, Cai T.
Biostatistics
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Evaluation of the association of bariatric surgery with subsequent depression.
Authors: Yuan W, Yu KH, Palmer N, Stanford FC, Kohane I.
Int J Obes (Lond)
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Pre-existing autoimmune disease and the risk of immune-related adverse events among patients receiving checkpoint inhibitors for cancer.
Authors: Kehl KL, Yang S, Awad MM, Palmer N, Kohane IS, Schrag D.
Cancer Immunol Immunother
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Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes.
Authors: Hejblum BP, Weber GM, Liao KP, Palmer NP, Churchill S, Shadick NA, Szolovits P, Murphy SN, Kohane IS, Cai T.
Sci Data
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Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease.
Authors: Palmer NP, Silvester JA, Lee JJ, Beam AL, Fried I, Valtchinov VI, Rahimov F, Kong SW, Ghodoussipour S, Hood HC, Bousvaros A, Grand RJ, Kunkel LM, Kohane IS.
PLoS One
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Systemic nature of spinal muscular atrophy revealed by studying insurance claims.
Authors: Lipnick SL, Agniel DM, Aggarwal R, Makhortova NR, Finlayson SG, Brocato A, Palmer N, Darras BT, Kohane I, Rubin LL.
PLoS One
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Data-driven analyses revealed the comorbidity landscape of tuberous sclerosis complex.
Authors: Yu KH, Miron O, Palmer N, Lemos DR, Fox K, Kou SC, Sahin M, Kohane IS.
Neurology
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Doubly robust matching estimators for high dimensional confounding adjustment.
Authors: Antonelli J, Cefalu M, Palmer N, Agniel D.
Biometrics
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