Braden Tierney

Braden Tierney, PhD

Director of Exposomics and Microbial Data Science

Braden Tierney builds experimental and computational tools that leverage large-scale multi-omic microbiome and exposome data to address fundamental questions regarding mechanisms of the ecosystem-microbe interface while also providing paths to microbial biotechnologies, including human therapeutics and environmental probiotics. Generally, his work employs three approaches: 1) Algorithmic development for evolutionary, gene-level analysis of viral and bacterial communities in the context of host disease and exposure, 2) construction, sequencing, and analyzing of massive-scale biobanks comprising diverse, clinical and environmental samples, and 3) tool development for data-driven culturomics of environmental and human microbes. His work focuses on microbial dynamics in diverse ecosystems, including developing gut microbiome architectures as diagnostic biomarkers for diseases such as colorectal cancer, coronary artery disease, and type 2 diabetes, as well as investigating microbiome-immune interactions in spaceflight, wastewater microbiota as tools for tracking public health, and the effects of dietary shifts on microbiome composition and host immune expression. With industry partners, his teams works to translate these findings into applied settings through randomized clinical trials. Finally, he serve as the Executive Director of the Two Frontiers Project (2FP), which, via expeditions around the globe, uses on sequencing, culturing, and biobanking microbes from extreme environments to solve major problems in public and planetary health, with an emphasis on carbon capture, coral reef health, and sustainable agriculture.

Spatial multi-omics of human skin reveals KRAS and inflammatory responses to spaceflight.
Authors: Park J, Overbey EG, Narayanan SA, Kim J, Tierney BT, Damle N, Najjar D, Ryon KA, Proszynski J, Kleinman A, Hirschberg JW, MacKay M, Afshin EE, Granstein R, Gurvitch J, Hudson BM, Rininger A, Mullane S, Church SE, Meydan C, Church G, Beheshti A, Mateus J, Mason CE.
Nat Commun
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Collection of biospecimens from the inspiration4 mission establishes the standards for the space omics and medical atlas (SOMA).
Authors: Overbey EG, Ryon K, Kim J, Tierney BT, Klotz R, Ortiz V, Mullane S, Schmidt JC, MacKay M, Damle N, Najjar D, Matei I, Patras L, Garcia Medina JS, Kleinman AS, Wain Hirschberg J, Proszynski J, Narayanan SA, Schmidt CM, Afshin EE, Innes L, Saldarriaga MM, Schmidt MA, Granstein RD, Shirah B, Yu M, Lyden D, Mateus J, Mason CE.
Nat Commun
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Single-cell multi-ome and immune profiles of the Inspiration4 crew reveal conserved, cell-type, and sex-specific responses to spaceflight.
Authors: Kim J, Tierney BT, Overbey EG, Dantas E, Fuentealba M, Park J, Narayanan SA, Wu F, Najjar D, Chin CR, Meydan C, Loy C, Mathyk B, Klotz R, Ortiz V, Nguyen K, Ryon KA, Damle N, Houerbi N, Patras LI, Schanzer N, Hutchinson GA, Foox J, Bhattacharya C, Mackay M, Afshin EE, Hirschberg JW, Kleinman AS, Schmidt JC, Schmidt CM, Schmidt MA, Beheshti A, Matei I, Lyden D, Mullane S, Asadi A, Lenz JS, Mzava O, Yu M, Ganesan S, De Vlaminck I, Melnick AM, Barisic D, Winer DA, Zwart SR, Crucian BE, Smith SM, Mateus J, Furman D, Mason CE.
Nat Commun
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Spatiotemporal expression and control of haemoglobin in space.
Authors: Borg J, Loy C, Kim J, Buhagiar A, Chin C, Damle N, De Vlaminck I, Felice A, Liu T, Matei I, Meydan C, Muratani M, Mzava O, Overbey E, Ryon KA, Smith SM, Tierney BT, Trudel G, Zwart SR, Beheshti A, Mason CE, Borg J.
Nat Commun
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Publisher Correction: Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium.
Authors: Flores VS, Amgarten DE, Iha BKV, Ryon KA, Danko D, Tierney BT, Mason C, da Silva AM, Setubal JC.
Sci Rep
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Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium.
Authors: Flores VS, Amgarten DE, Iha BKV, Ryon KA, Danko D, Tierney BT, Mason C, da Silva AM, Setubal JC.
Sci Rep
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Genome and clonal hematopoiesis stability contrasts with immune, cfDNA, mitochondrial, and telomere length changes during short duration spaceflight.
Authors: Garcia-Medina JS, Sienkiewicz K, Narayanan SA, Overbey EG, Grigorev K, Ryon KA, Burke M, Proszynski J, Tierney B, Schmidt CM, Mencia-Trinchant N, Klotz R, Ortiz V, Foox J, Chin C, Najjar D, Matei I, Chan I, Cruchaga C, Kleinman A, Kim J, Lucaci A, Loy C, Mzava O, De Vlaminck I, Singaraju A, Taylor LE, Schmidt JC, Schmidt MA, Blease K, Moreno J, Boddicker A, Zhao J, Lajoie B, Altomare A, Kruglyak S, Levy S, Yu M, Hassane DC, Bailey SM, Bolton K, Mateus J, Mason CE.
Precis Clin Med
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Horizon scanning the application of probiotics for wildlife.
Authors: Garcias-Bonet N, Roik A, Tierney B, García FC, Villela HDM, Dungan AM, Quigley KM, Sweet M, Berg G, Gram L, Bourne DG, Ushijima B, Sogin M, Hoj L, Duarte G, Hirt H, Smalla K, Rosado AS, Carvalho S, Thurber RV, Ziegler M, Mason CE, van Oppen MJH, Voolstra CR, Peixoto RS.
Trends Microbiol
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Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation.
Authors: Tierney BT, Kim J, Overbey EG, Ryon KA, Foox J, Sierra M, Bhattacharya C, Damle N, Najjar D, Park J, Garcia Medina S, Houerbi N, Meydan C, Wain Hershberg J, Qiu J, Kleinman A, Al Ghalith G, MacKay M, Afshin EE, Dhir R, Borg J, Gatt C, Brereton N, Readhead B, Beyaz S, Venkateswaran KJ, Blease K, Moreno J, Boddicker A, Zhao J, Lajoie B, Scott RT, Altomare A, Kruglyak S, Levy S, Church G, Mason CE.
Res Sq
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Geospatially-resolved public-health surveillance via wastewater sequencing.
Authors: Tierney BT, Foox J, Ryon KA, Butler D, Damle N, Young BG, Mozsary C, Babler KM, Yin X, Carattini Y, Andrews D, Solle NS, Kumar N, Shukla B, Vidovic D, Currall B, Williams SL, Schürer SC, Stevenson M, Amirali A, Beaver CC, Kobetz E, Boone MM, Reding B, Laine J, Comerford S, Lamar WE, Tallon JJ, Hirschberg JW, Proszynski J, Sharkey ME, Church GM, Grills GS, Solo-Gabriele HM, Mason CE.
medRxiv
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