Maximillian Marin

Maximillian Marin, Ph.D.

Research Fellow in Biomedical Informatics, Harvard Medical School

Biomedical Informatics Training Fellowship, 2023-2025

Farhat Lab

Bio
Publications

Max is interested in developing methods to better understand genome regulation and evolution.

Previous Education:

BS, Molecular, Cellular, & Developmental Biology - University of California, Santa Cruz

PhD - Harvard University

Exploring gene content with pangene graphs.

Authors: Li H, Marin M, Farhat MR.
Bioinformatics 2024-07-23
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Identification of bacterial determinants of tuberculosis infection and treatment outcomes: a phenogenomic analysis of clinical strains.

Authors: Stanley S, Spaulding CN, Liu Q, Chase MR, Ha DTM, Thai PVK, Lan NH, Thu DDA, Quang NL, Brown J, Hicks ND, Wang X, Marin M, Howard NC, Vickers AJ, Karpinski WM, Chao MC, Farhat MR, Caws M, Dunstan SJ, Thuong NTT, Fortune SM.
Lancet Microbe 2024-06-01
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Exploring gene content with pangene graphs.

Authors: Li H, Marin M, Farhat MR.
ArXiv 2024-05-29
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Analysis of the limited M. tuberculosis accessory genome reveals potential pitfalls of pan-genome analysis approaches.

Authors: Marin MG, Wippel C, Quinones-Olvera N, Behruznia M, Jeffrey BM, Harris M, Mann BC, Rosenthal A, Jacobson KR, Warren RM, Li H, Meehan CJ, Farhat MR.
bioRxiv 2024-05-04
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Diverse and abundant phages exploit conjugative plasmids.

Authors: Quinones-Olvera N, Owen SV, McCully LM, Marin MG, Rand EA, Fan AC, Martins Dosumu OJ, Paul K, Sanchez Castaño CE, Petherbridge R, Paull JS, Baym M.
Nat Commun 2024-04-12
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Evaluating generalizability of artificial intelligence models for molecular datasets.

Authors: Ektefaie Y, Shen A, Bykova D, Marin M, Zitnik M, Farhat M.
bioRxiv 2024-02-28
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Diverse and abundant phages exploit conjugative plasmids.

Authors: Quinones-Olvera N, Owen SV, McCully LM, Marin MG, Rand EA, Fan AC, Martins Dosumu OJ, Paul K, Sanchez Castaño CE, Petherbridge R, Paull JS, Baym M.
bioRxiv 2023-12-21
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Full-length transcript alterations in human bronchial epithelial cells with U2AF1 S34F mutations.

Authors: Soulette CM, Hrabeta-Robinson E, Arevalo C, Felton C, Tang AD, Marin MG, Brooks AN.
Life Sci Alliance 2023-10-01
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Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex.

Authors: Vargas R, Luna MJ, Freschi L, Marin M, Froom R, Murphy KC, Campbell EA, Ioerger TR, Sassetti CM, Farhat MR.
Proc Natl Acad Sci U S A 2023-07-11
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Analysis of Genome-Wide Mutational Dependence in Naturally Evolving Mycobacterium tuberculosis Populations.

Authors: Green AG, Vargas R, Marin MG, Freschi L, Xie J, Farhat MR.
Mol Biol Evol 2023-06-01
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