Ruslan A Soldatov, Ph.D.
Ruslan Soldatov, PhD
Instructor in Biomedical Informatics, Harvard Medical School

Ruslan Soldatov received his PhD in computational biology from the Institute for Information Transmission Problems, Moscow. His research was focused on structure and function of non-coding RNAs and molecular mechanisms of mutational processes in human. His current research is focused on lineage tracing and cell fate decision analysis of developmental processes based on single-cell sequencing data.

Cell segmentation in imaging-based spatial transcriptomics.
Authors: Petukhov V, Xu RJ, Soldatov RA, Cadinu P, Khodosevich K, Moffitt JR, Kharchenko PV.
Nat Biotechnol
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Population sequencing data reveal a compendium of mutational processes in the human germ line.
Authors: Seplyarskiy VB, Soldatov RA, Koch E, McGinty RJ, Goldmann JM, Hernandez RD, Barnes K, Correa A, Burchard EG, Ellinor PT, McGarvey ST, Mitchell BD, Vasan RS, Redline S, Silverman E, Weiss ST, Arnett DK, Blangero J, Boerwinkle E, He J, Montgomery C, Rao DC, Rotter JI, Taylor KD, Brody JA, Chen YI, de Las Fuentes L, Hwu CM, Rich SS, Manichaikul AW, Mychaleckyj JC, Palmer ND, Smith JA, Kardia SLR, Peyser PA, Bielak LF, O'Connor TD, Emery LS, Gilissen C, Wong WSW, Kharchenko PV, Sunyaev S.
Science
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RNA velocity-current challenges and future perspectives.
Authors: Bergen V, Soldatov RA, Kharchenko PV, Theis FJ.
Mol Syst Biol
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Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth.
Authors: Krivanek J, Soldatov RA, Kastriti ME, Chontorotzea T, Herdina AN, Petersen J, Szarowska B, Landova M, Matejova VK, Holla LI, Kuchler U, Zdrilic IV, Vijaykumar A, Balic A, Marangoni P, Klein OD, Neves VCM, Yianni V, Sharpe PT, Harkany T, Metscher BD, Bajénoff M, Mina M, Fried K, Kharchenko PV, Adameyko I.
Nat Commun
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Spatiotemporal structure of cell fate decisions in murine neural crest.
Authors: Soldatov R, Kaucka M, Kastriti ME, Petersen J, Chontorotzea T, Englmaier L, Akkuratova N, Yang Y, Häring M, Dyachuk V, Bock C, Farlik M, Piacentino ML, Boismoreau F, Hilscher MM, Yokota C, Qian X, Nilsson M, Bronner ME, Croci L, Hsiao WY, Guertin DA, Brunet JF, Consalez GG, Ernfors P, Fried K, Kharchenko PV, Adameyko I.
Science
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RNA velocity of single cells.
Authors: La Manno G, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, Fan J, Borm LE, Liu Z, van Bruggen D, Guo J, He X, Barker R, Sundström E, Castelo-Branco G, Cramer P, Adameyko I, Linnarsson S, Kharchenko PV.
Nature
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Evolution of Local Mutation Rate and Its Determinants.
Authors: Terekhanova NV, Seplyarskiy VB, Soldatov RA, Bazykin GA.
Mol Biol Evol
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Differential processing of small RNAs during endoplasmic reticulum stress.
Authors: Mesitov MV, Soldatov RA, Zaichenko DM, Malakho SG, Klementyeva TS, Sokolovskaya AA, Kubatiev AA, Mironov AA, Moskovtsev AA.
Sci Rep
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APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication.
Authors: Seplyarskiy VB, Soldatov RA, Popadin KY, Antonarakis SE, Bazykin GA, Nikolaev SI.
Genome Res
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Probing-directed identification of novel structured RNAs.
Authors: Vinogradova SV, Sutormin RA, Mironov AA, Soldatov RA.
RNA Biol
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