Braden Tierney

Braden Tierney, PhD

Director of Exposomics and Microbial Data Science

Braden Tierney builds experimental and computational tools that leverage large-scale multi-omic microbiome and exposome data to address fundamental questions regarding mechanisms of the ecosystem-microbe interface while also providing paths to microbial biotechnologies, including human therapeutics and environmental probiotics. Generally, his work employs three approaches: 1) Algorithmic development for evolutionary, gene-level analysis of viral and bacterial communities in the context of host disease and exposure, 2) construction, sequencing, and analyzing of massive-scale biobanks comprising diverse, clinical and environmental samples, and 3) tool development for data-driven culturomics of environmental and human microbes. His work focuses on microbial dynamics in diverse ecosystems, including developing gut microbiome architectures as diagnostic biomarkers for diseases such as colorectal cancer, coronary artery disease, and type 2 diabetes, as well as investigating microbiome-immune interactions in spaceflight, wastewater microbiota as tools for tracking public health, and the effects of dietary shifts on microbiome composition and host immune expression. With industry partners, his teams works to translate these findings into applied settings through randomized clinical trials. Finally, he serve as the Executive Director of the Two Frontiers Project (2FP), which, via expeditions around the globe, uses on sequencing, culturing, and biobanking microbes from extreme environments to solve major problems in public and planetary health, with an emphasis on carbon capture, coral reef health, and sustainable agriculture.

What is the vibration of effects?
Authors: Vinatier C, Hoffmann S, Patel C, DeVito NJ, Cristea IA, Tierney B, Ioannidis JPA, Naudet F.
BMJ Evid Based Med
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Perspectives on the future of ecology, evolution, and biodiversity from the Council on Microbial Sciences of the American Society for Microbiology.
Authors: Akob DM, Oates AE, Girguis PR, Badgley BD, Cooper VS, Poretsky RS, Tierney BT, Litchman E, Whitaker RJ, Whiteson KL, Metcalf CJE.
mSphere
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Cyanobacteria newly isolated from marine volcanic seeps display rapid sinking and robust, high-density growth.
Authors: Schubert MG, Tang T-C, Goodchild-Michelman IM, Ryon KA, Henriksen JR, Chavkin T, Wu Y, Miettinen TP, Van Wychen S, Dahlin LR, Spatafora D, Turco G, Guarnieri MT, Manalis SR, Kowitz J, Hann EC, Dhir R, Quatrini P, Mason CE, Church GM, Milazzo M, Tierney BT.
Appl Environ Microbiol
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Towards geospatially-resolved public-health surveillance via wastewater sequencing.
Authors: Tierney BT, Foox J, Ryon KA, Butler D, Damle N, Young BG, Mozsary C, Babler KM, Yin X, Carattini Y, Andrews D, Lucaci AG, Solle NS, Kumar N, Shukla B, Vidovic D, Currall B, Williams SL, Schürer SC, Stevenson M, Amirali A, Beaver CC, Kobetz E, Boone MM, Reding B, Laine J, Comerford S, Lamar WE, Tallon JJ, Wain Hirschberg J, Proszynski J, Al Ghalith G, Can Kurt K, Sharkey ME, Church GM, Grills GS, Solo-Gabriele HM, Mason CE.
Nat Commun
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CAMP: A modular metagenomics analysis system for integrated multi-step data exploration.
Authors: Mak L, Tierney B, Ronkowski C, Toscan RB, Turhan B, Toomey M, Martinez JSA, Fu C, Lucaci AG, Solano AHB, Setubal JC, Henriksen JR, Zimmerman S, Kopbayeva M, Noyvert A, Iwan Z, Kar S, Nakazawa N, Meleshko D, Horyslavets D, Kantsypa V, Frolova A, Kahles A, Danko D, Elhaik E, Labaj P, Mangul S, Mason CE, Hajirasouliha I.
bioRxiv
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Molecular and physiological changes in the SpaceX Inspiration4 civilian crew.
Authors: Jones CW, Overbey EG, Lacombe J, Ecker AJ, Meydan C, Ryon K, Tierney B, Damle N, MacKay M, Afshin EE, Foox J, Park J, Nelson TM, Suhail Mohamad M, Byhaqui SGA, Aslam B, Tali UA, Nisa L, Menon PV, Patel CO, Khan SA, Ebert DJ, Everson A, Schubert MC, Ali NN, Sarma MS, Kim J, Houerbi N, Grigorev K, Garcia Medina JS, Summers AJ, Gu J, Altin JA, Fattahi A, Hirzallah MI, Wu JH, Stahn AC, Beheshti A, Klotz R, Ortiz V, Yu M, Patras L, Matei I, Lyden D, Melnick A, Banerjee N, Mullane S, Kleinman AS, Loesche M, Menon AS, Donoviel DB, Urquieta E, Mateus J, Sargsyan AE, Shelhamer M, Zenhausern F, Bershad EM, Basner M, Mason CE.
Nature
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A second space age spanning omics, platforms and medicine across orbits.
Authors: Mason CE, Green J, Adamopoulos KI, Afshin EE, Baechle JJ, Basner M, Bailey SM, Bielski L, Borg J, Borg J, Broddrick JT, Burke M, Caicedo A, Castañeda V, Chatterjee S, Chin CR, Church G, Costes SV, De Vlaminck I, Desai RI, Dhir R, Diaz JE, Etlin SM, Feinstein Z, Furman D, Garcia-Medina JS, Garrett-Bakelman F, Giacomello S, Gupta A, Hassanin A, Houerbi N, Irby I, Javorsky E, Jirak P, Jones CW, Kamal KY, Kangas BD, Karouia F, Kim J, Kim JH, Kleinman AS, Lam T, Lawler JM, Lee JA, Limoli CL, Lucaci A, MacKay M, McDonald JT, Melnick AM, Meydan C, Mieczkowski J, Muratani M, Najjar D, Othman MA, Overbey EG, Paar V, Park J, Paul AM, Perdyan A, Proszynski J, Reynolds RJ, Ronca AE, Rubins K, Ryon KA, Sanders LM, Glowe PS, Shevde Y, Schmidt MA, Scott RT, Shirah B, Sienkiewicz K, Sierra MA, Siew K, Theriot CA, Tierney BT, Venkateswaran K, Hirschberg JW, Walsh SB, Walter C, Winer DA, Yu M, Zea L, Mateus J, Beheshti A.
Nature
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The Space Omics and Medical Atlas (SOMA) and international astronaut biobank.
Authors: Overbey EG, Kim J, Tierney BT, Park J, Houerbi N, Lucaci AG, Garcia Medina S, Damle N, Najjar D, Grigorev K, Afshin EE, Ryon KA, Sienkiewicz K, Patras L, Klotz R, Ortiz V, MacKay M, Schweickart A, Chin CR, Sierra MA, Valenzuela MF, Dantas E, Nelson TM, Cekanaviciute E, Deards G, Foox J, Narayanan SA, Schmidt CM, Schmidt MA, Schmidt JC, Mullane S, Tigchelaar SS, Levitte S, Westover C, Bhattacharya C, Lucotti S, Wain Hirschberg J, Proszynski J, Burke M, Kleinman AS, Butler DJ, Loy C, Mzava O, Lenz J, Paul D, Mozsary C, Sanders LM, Taylor LE, Patel CO, Khan SA, Suhail Mohamad M, Byhaqui SGA, Aslam B, Gajadhar AS, Williamson L, Tandel P, Yang Q, Chu J, Benz RW, Siddiqui A, Hornburg D, Blease K, Moreno J, Boddicker A, Zhao J, Lajoie B, Scott RT, Gilbert RR, Lai Polo SH, Altomare A, Kruglyak S, Levy S, Ariyapala I, Beer J, Zhang B, Hudson BM, Rininger A, Church SE, Beheshti A, Church GM, Smith SM, Crucian BE, Zwart SR, Matei I, Lyden DC, Garrett-Bakelman F, Krumsiek J, Chen Q, Miller D, Shuga J, Williams S, Nemec C, Trudel G, Pelchat M, Laneuville O, De Vlaminck I, Gross S, Bolton KL, Bailey SM, Granstein R, Furman D, Melnick AM, Costes SV, Shirah B, Yu M, Menon AS, Mateus J, Meydan C, Mason CE.
Nature
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Protective alleles and precision healthcare in crewed spaceflight.
Authors: Rutter LA, MacKay MJ, Cope H, Szewczyk NJ, Kim J, Overbey E, Tierney BT, Muratani M, Lamm B, Bezdan D, Paul AM, Schmidt MA, Church GM, Giacomello S, Mason CE.
Nat Commun
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Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight.
Authors: Tierney BT, Kim J, Overbey EG, Ryon KA, Foox J, Sierra MA, Bhattacharya C, Damle N, Najjar D, Park J, Garcia Medina JS, Houerbi N, Meydan C, Wain Hirschberg J, Qiu J, Kleinman AS, Al-Ghalith GA, MacKay M, Afshin EE, Dhir R, Borg J, Gatt C, Brereton N, Readhead BP, Beyaz S, Venkateswaran KJ, Wiseman K, Moreno J, Boddicker AM, Zhao J, Lajoie BR, Scott RT, Altomare A, Kruglyak S, Levy S, Church GM, Mason CE.
Nat Microbiol
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