Chirag Patel, PhD
Associate Professor of Biomedical Informatics
Chirag Patel's long-term research goal is to address problems in human health and disease by developing computational and bioinformatics methods to reproducibly and efficiently reason over high-throughput data streams spanning molecules to populations. Patel's group aims to dissect inter-individual differences in human phenomes through strategies that integrate data sources that capture the comprehensive clinical experience (e.g., through the electronic medical record), the complex phenomena of environmental exposure (e.g., high-throughput measures of the exposome), and inherited genomic variation. He received his doctorate in biomedical informatics from Stanford University.
DBMI Research Areas
DBMI Courses
- BMI 704 - Data Science I: Data Science for Medical Decision Making
- BMI 722 - Topics in Translational Biomedical Informatics
Career Opportunities
VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction.
Authors: Mall R, Singh A, Patel CN, Guirimand G, Castiglione F.
Brief Bioinform
View full abstract on Pubmed
Brief Bioinform
View full abstract on Pubmed
Implications of Race Adjustment in Lung-Function Equations.
Authors: Diao JA, He Y, Khazanchi R, Nguemeni Tiako MJ, Witonsky JI, Pierson E, Rajpurkar P, Elhawary JR, Melas-Kyriazi L, Yen A, Martin AR, Levy S, Patel CJ, Farhat M, Borrell LN, Cho MH, Silverman EK, Burchard EG, Manrai AK.
N Engl J Med
View full abstract on Pubmed
N Engl J Med
View full abstract on Pubmed
Advanced cardiac imaging, machine learning, and heart age for cardiovascular risk stratification.
Heterogeneity in elevated glucose and A1C as predictors of the prediabetes to diabetes transition: Framingham Heart Study, Multi-Ethnic Study on Atherosclerosis, Jackson Heart Study, and Atherosclerosis Risk In Communities.
Authors: Patel CJ, Ioannidis JP, Gregg EW, Vasan RS, Manrai AK.
medRxiv
View full abstract on Pubmed
medRxiv
View full abstract on Pubmed
Arterial Spin-Labeling and DSC Perfusion Metrics Improve Agreement in Neuroradiologists' Clinical Interpretations of Posttreatment High-Grade Glioma Surveillance MR Imaging-An Institutional Experience.
Authors: Yamin G, Tranvinh E, Lanzman BA, Tong E, Hashmi SS, Patel CB, Iv M.
AJNR Am J Neuroradiol
View full abstract on Pubmed
AJNR Am J Neuroradiol
View full abstract on Pubmed
Grilling the data: application of specification curve analysis to red meat and all-cause mortality.
Authors: Wang Y, Pitre T, Wallach JD, de Souza RJ, Jassal T, Bier D, Patel CJ, Zeraatkar D.
J Clin Epidemiol
View full abstract on Pubmed
J Clin Epidemiol
View full abstract on Pubmed
Assessing the genetic contribution of cumulative behavioral factors associated with longitudinal type 2 diabetes risk highlights adiposity and the brain-metabolic axis.
Authors: Carvalho NRG, He Y, Smadbeck P, Flannick J, Mercader JM, Udler M, Manrai AK, Moreno J, Patel CJ.
medRxiv
View full abstract on Pubmed
medRxiv
View full abstract on Pubmed
Morning exercise as fasted-state activity. Reply to Chacko E [letter].
A General Strategy for N-(Hetero)arylpiperidine Synthesis Using Zincke Imine Intermediates.
Authors: Selingo JD, Greenwood JW, Andrews MK, Patel C, Neel AJ, Pio B, Shevlin M, Phillips EM, Maddess ML, McNally A.
J Am Chem Soc
View full abstract on Pubmed
J Am Chem Soc
View full abstract on Pubmed
Pediatric and Young Adult Household Transmission of the Initial Waves of SARS-CoV-2 in the United States: Administrative Claims Study.